{ "_id": "6ab6461b99f7aa8c6aa2d0a4", "Package": "screenllm", "Title": "LLM-Assisted Title/Abstract Screening for Systematic Reviews", "Version": "0.1.0", "Authors@R": "c(\nperson(\"Scott\", \"Spillias\", email = \"scott.spillias@csiro.au\",\nrole = c(\"aut\", \"cre\")),\nperson(\"Laura\", \"Avila Turriago\", role = \"aut\"),\nperson(\"Christopher\", \"Brown\", role = \"aut\"),\nperson(\"Ariane\", \"Easton\", role = \"aut\"),\nperson(\"Jack\", \"Roberts\", role = \"aut\"),\nperson(\"Michael\", \"Sievers\", role = \"aut\"),\nperson(\"Steve\", \"Swearer\", role = \"aut\"),\nperson(\"Andrew\", \"Taylor\", role = \"aut\"),\nperson(\"Brigette\", \"Wright\", role = \"aut\"),\nperson(\"Valeriya\", \"Komyakova\", role = \"aut\"))", "Description": "A turn-key workflow for LLM-assisted systematic-review\nscreening. The package ranks a corpus of titles and abstracts\nwith an ensemble of open-source large language models served\nlocally by 'Ollama', then applies the SAFE stopping rule to\nidentify the records a human should screen. Defaults match the\nfour-LLM mean ensemble and the SAFE configuration recommended\nby Spillias et al. (2026). A companion 'Shiny' app walks the\nhuman reviewer through the records above the stopping point.\nComplementary to the 'AIscreenR' package of Vembye et al.\n(2025) , which targets cloud-hosted\n'GPT' models via the 'OpenAI' API; 'screenllm' targets\nlocally-served open-weights ensembles with an integrated\nstopping rule.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "Config/testthat/edition": "3", "VignetteBuilder": "knitr", "URL": "https://github.com/s-spillias/screenllm", "BugReports": "https://github.com/s-spillias/screenllm/issues", "Config/roxygen2/version": "8.0.0", "Config/pak/sysreqs": "cmake make libuv1-dev libssl-dev", "Repository": "https://s-spillias.r-universe.dev", "Date/Publication": "2026-09-15 05:24:00 UTC", "RemoteUrl": "https://github.com/s-spillias/screenllm", "RemoteRef": "HEAD", "RemoteSha": "cc5678d528e9bbee56153b333b49524226143a7f", "NeedsCompilation": "no", "Packaged": { "Date": "2026-09-25 09:56:31 UTC", "User": "root" }, "Author": "Scott Spillias [aut, cre],\nLaura Avila Turriago [aut],\nChristopher Brown [aut],\nAriane Easton [aut],\nJack Roberts [aut],\nMichael Sievers [aut],\nSteve Swearer [aut],\nAndrew Taylor [aut],\nBrigette Wright [aut],\nValeriya Komyakova [aut]", "Maintainer": "Scott Spillias ", "_user": "s-spillias", "_type": "src", "_file": "screenllm_0.1.0.tar.gz", "_fileid": "https://r2.ropensci.org/b5b39fe0950384f854dc68df32aea633effa07f6c83017170ae5155647b96303", "_filesize": 314545, "_sha256": "b5b39fe0950384f854dc68df32aea633effa07f6c83017170ae5155647b96303", "_expires": "2027-01-03T09:59:53.000Z", "_created": "2026-09-25T09:56:31.000Z", "_published": "2026-09-25T09:59:55.759Z", "_jobs": [ { "job": 108027070087, "time": 138, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "10858306174" }, { "job": 108027070114, "time": 155, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "10858286219" }, { "job": 108027070231, "time": 151, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "10857701935" }, { "job": 108027070090, "time": 156, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "10858026253" }, { "job": 108025727965, "time": 272, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "10857446721" }, { "job": 108027070065, "time": 125, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "10858331069" }, { "job": 108027070325, "time": 90, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "10857416975" }, { "job": 108027070241, "time": 91, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "10857861647" }, { "job": 108027070173, "time": 86, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "10858590894" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/s-spillias/actions/runs/36120822649", "_status": "success", "_upstream": "https://github.com/s-spillias/screenllm", "_commit": { "id": "cc5678d528e9bbee56153b333b49524226143a7f", "author": "s-spillias ", "committer": "s-spillias ", "message": "fix(cran): quote 'GPT', keep DOI contiguous, stop tests writing to $HOME\n\nFollow-up to the reviewer round while double-checking compliance:\n\n- DESCRIPTION: single-quote 'GPT'; reflow so the reference reads\n \"Vembye et al. (2025) \" on one line (year and\n DOI no longer split across a continuation line).\n- Tests: add tests/testthat/setup.R that points R_USER_DATA_DIR and\n R_USER_CACHE_DIR at tempdir() for the whole suite. test-async-pull.R\n was creating ~/.cache/R/screenllm/pulls in the real home filespace\n (pull_progress_path() under R_user_dir(\"cache\")); the check now leaves\n both the data and cache user dirs empty.\n- project.R: track the data-root fallback warning in a package-internal\n environment instead of options(), so no function changes user options\n at runtime (only .onLoad sets the package's own defaults).\n\nR CMD check --as-cran: 0 errors, 0 warnings, 1 NOTE (New submission);\nhome data and cache dirs verified empty after a clean-slate check.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) \n", "time": 1789449840 }, "_maintainer": { "name": "Scott Spillias", "email": "scott.spillias@csiro.au", "login": "s-spillias", "description": "", "uuid": 47622332 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "cli", "role": "Imports" }, { "package": "digest", "role": "Imports" }, { "package": "fs", "role": "Imports" }, { "package": "jsonlite", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "httr2", "role": "Imports" }, { "package": "glue", "role": "Imports" }, { "package": "shiny", "role": "Suggests" }, { "package": "bslib", "role": "Suggests" }, { "package": "DT", "role": "Suggests" }, { "package": "callr", "role": "Suggests" }, { "package": "later", "role": "Suggests" }, { "package": "writexl", "role": "Suggests" }, { "package": "readxl", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "readr", "role": "Suggests" }, { "package": "withr", "role": "Suggests" }, { "package": "mockery", "role": "Suggests" }, { "package": "stringdist", "role": "Suggests" } ], "_owner": "s-spillias", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-29", "n": 55 }, { "week": "2026-30", "n": 11 }, { "week": "2026-35", "n": 3 }, { "week": "2026-36", "n": 5 }, { "week": "2026-38", "n": 3 } ], "_tags": [ { "name": "v0.1.0-alpha", "date": "2026-07-13" }, { "name": "v0.1.0-alpha.2", "date": "2026-07-14" }, { "name": "v0.1.0", "date": "2026-09-15" } ], "_stars": 0, "_contributors": [ { "user": "s-spillias", "count": 77, "uuid": 47622332 } ], "_userbio": { "uuid": 47622332, "type": "user", "name": "s-spillias", "followers": 9 }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/screenllm" }, "_devurl": "https://github.com/s-spillias/screenllm", "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/screenllm.html", "LICENSE" ], "_homeurl": "https://github.com/s-spillias/screenllm", "_realowner": "s-spillias", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2026-09-24" } ], "_exports": [ "audit_disagreements", "backend_mock", "backend_ollama", "build_prompt", "check_setup", "clear_cache", "custom_ensemble", "default_ensemble", "default_ensemble_light", "define_criteria", "delete_artefact", "delete_model", "detect_gpu", "estimate_runtime", "export_report", "export_worksheet", "find_duplicates", "gpu_status", "install_prereqs", "launch_app", "launch_screening_app", "list_project_artefacts", "list_projects", "load_artefact", "load_toy_cbfm_criteria", "ollama_catalog", "ollama_health", "ollama_installed_models_detail", "plan_screening", "pull_model", "rank_records", "read_decisions", "read_records", "save_artefact", "summarise_screening" ], "_help": [ { "page": "audit_disagreements", "title": "Surface strong LLM-human disagreements for a manual audit", "topics": [ "audit_disagreements" ] }, { "page": "backend_mock", "title": "Mock backend for tests", "topics": [ "backend_mock" ] }, { "page": "backend_ollama", "title": "Ollama backend", "topics": [ "backend_ollama" ] }, { "page": "build_prompt", "title": "Build a screening prompt for one record", "topics": [ "build_prompt" ] }, { "page": "check_setup", "title": "Verify local setup for 'screenllm'", "topics": [ "check_setup" ] }, { "page": "clear_cache", "title": "Clear cached LLM scores for a project", "topics": [ "clear_cache" ] }, { "page": "custom_ensemble", "title": "Define a custom LLM ensemble", "topics": [ "custom_ensemble" ] }, { "page": "default_ensemble", "title": "The paper's default LLM ensemble", "topics": [ "default_ensemble" ] }, { "page": "default_ensemble_light", "title": "A \"light\" ensemble that runs on a laptop", "topics": [ "default_ensemble_light" ] }, { "page": "define_criteria", "title": "Define screening inclusion criteria", "topics": [ "define_criteria" ] }, { "page": "delete_artefact", "title": "Delete an artefact (or a whole project)", "topics": [ "delete_artefact" ] }, { "page": "delete_model", "title": "Delete an Ollama model to free up disk space", "topics": [ "delete_model" ] }, { "page": "detect_gpu", "title": "Detect a usable GPU for Ollama inference", "topics": [ "detect_gpu" ] }, { "page": "estimate_runtime", "title": "Estimate wall-clock time for a ranking run", "topics": [ "estimate_runtime" ] }, { "page": "export_report", "title": "Render the screening report as a self-contained HTML document", "topics": [ "export_report" ] }, { "page": "export_worksheet", "title": "Export the human-screening worksheet", "topics": [ "export_worksheet" ] }, { "page": "find_duplicates", "title": "Detect and remove duplicate records", "topics": [ "find_duplicates" ] }, { "page": "gpu_status", "title": "Live NVIDIA GPU status snapshot", "topics": [ "gpu_status" ] }, { "page": "install_prereqs", "title": "One-stop setup for a fresh machine", "topics": [ "install_prereqs" ] }, { "page": "launch_app", "title": "Launch the full end-to-end Shiny app", "topics": [ "launch_app" ] }, { "page": "launch_screening_app", "title": "Launch the interactive screening Shiny app", "topics": [ "launch_screening_app" ] }, { "page": "list_project_artefacts", "title": "Canonical artefact filenames", "topics": [ "list_project_artefacts" ] }, { "page": "list_projects", "title": "List existing project names", "topics": [ "list_projects" ] }, { "page": "load_artefact", "title": "Load an artefact from a project directory", "topics": [ "load_artefact" ] }, { "page": "load_toy_cbfm_criteria", "title": "Load the ready-made criteria for the toy CBFM corpus", "topics": [ "load_toy_cbfm_criteria" ] }, { "page": "ollama_catalog", "title": "Curated catalog of Ollama models useful for screening", "topics": [ "ollama_catalog" ] }, { "page": 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